Package: NetCoupler 0.1.0.9000

Luke Johnston

NetCoupler: Inference of Causal Links Between a Network and an External Variable

The 'NetCoupler' algorithm identifies potential direct effects of correlated, high-dimensional variables formed as a network with an external variable. The external variable may act as the dependent/response variable or as an independent/predictor variable to the network.

Authors:Luke Johnston [aut, cre, cph], Clemens Wittenbecher [aut, cph], Fabian Eichelmann [ctb], Helena Zacharias [ctb], Daniel Ibsen [ctb]

NetCoupler_0.1.0.9000.tar.gz
NetCoupler_0.1.0.9000.zip(r-4.5)NetCoupler_0.1.0.9000.zip(r-4.4)NetCoupler_0.1.0.9000.zip(r-4.3)
NetCoupler_0.1.0.9000.tgz(r-4.5-any)NetCoupler_0.1.0.9000.tgz(r-4.4-any)NetCoupler_0.1.0.9000.tgz(r-4.3-any)
NetCoupler_0.1.0.9000.tar.gz(r-4.5-noble)NetCoupler_0.1.0.9000.tar.gz(r-4.4-noble)
NetCoupler_0.1.0.9000.tgz(r-4.4-emscripten)NetCoupler_0.1.0.9000.tgz(r-4.3-emscripten)
NetCoupler.pdf |NetCoupler.html
NetCoupler/json (API)
NEWS

# Install 'NetCoupler' in R:
install.packages('NetCoupler', repos = c('https://netcoupler.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/netcoupler/netcoupler/issues

Pkgdown site:https://netcoupler.github.io

Datasets:
  • simulated_data - Simulated dataset with an underlying Directed Graph structure for the metabolites.

On CRAN:

Conda:

4.78 score 6 stars 7 scripts 150 downloads 20 exports 56 dependencies

Last updated 1 years agofrom:af57087fc5. Checks:7 OK, 2 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 30 2025
R-4.5-winOKMar 30 2025
R-4.5-macOKMar 30 2025
R-4.5-linuxOKMar 30 2025
R-4.4-winOKMar 30 2025
R-4.4-macOKMar 30 2025
R-4.4-linuxOKMar 30 2025
R-4.3-winERRORMar 30 2025
R-4.3-macERRORMar 30 2025

Exports:%>%all_ofany_ofas_data_frameas_edge_tblas_tibbleclassify_optionscontainsdata_frameends_witheverythinglast_colmatchesnc_estimate_exposure_linksnc_estimate_networknc_estimate_outcome_linksnc_standardizenum_rangestarts_withtibble

Dependencies:abindaskpassbackportsbdsmatrixBHBiocGenericsBiocManagercheckmatecliclueclustercolorspacecorpcorcpp11DEoptimRdplyrfansifastICAgenericsggmgluegraphidsigraphlatticelifecyclelmtestmagrittrMASSMatrixopensslpcalgpillarpkgconfigppcorpurrrR6RBGLRcppRcppArmadillorlangrobustbasesfsmiscstringistringrsystibbletidygraphtidyrtidyselectutf8uuidvcdvctrswithrzoo

Getting started with NetCoupler

Rendered fromNetCoupler.Rmdusingknitr::rmarkdownon Mar 30 2025.

Last update: 2022-04-05
Started: 2020-03-16